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High Throughput Next Generation Sequence Analysis For Food Microbiologists

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Game Changer Next Generation Sequencing and Its Impact on Food Microbiology

Game Changer Next Generation Sequencing and Its Impact on Food Microbiology Book
Author : Jennifer Ronholm,Sabah Bidawid,Sandra Torriani
Publisher : Frontiers Media SA
Release : 2018-04-26
ISBN : 2889454630
Language : En, Es, Fr & De

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Book Description :

Advances in next-generation sequencing technologies (NGS) are revolutionizing the field of food microbiology. Microbial whole genome sequencing (WGS) can provide identification, characterization, and subtyping of pathogens for epidemiological investigations at a level of precision previously not possible. This allows for connections and source attribution to be inferred between related isolates that may be overlooked by traditional techniques. The archiving and global sharing of genome sequences allow for retrospective analysis of virulence genes, antimicrobial resistance markers, mobile genetic elements and other novel genes. The advent of high-throughput 16S rRNA amplicon sequencing, in combination with the advantages offered by massively parallel second-generation sequencing for metagenomics, enable intensive studies on the microbiomes of food products and the impact of foods on the human microbiome. These studies may one day lead to the development of reliable culture-independent methods for food monitoring and surveillance. Similarly, RNA-seq has provided insights into the transcriptomes and hence the behaviour of bacterial pathogens in food, food processing environments, and in interaction with the host at a resolution previously not achieved through the use of microarrays and/or RT-PCR. The vast un-tapped potential applications of NGS along with its rapidly declining costs, give this technology the ability to contribute significantly to consumer protection, global trade facilitation, and increased food safety and security. Despite the rapid advances, challenges remain. How will NGS data be incorporated into our existing global food safety infrastructure? How will massive NGS data be stored and shared globally? What bioinformatics solutions will be used to analyse and optimise these large data sets? This Research Topic discusses recent advances in the field of food microbiology made possible through the use of NGS.

Sequencing Technologies in Microbial Food Safety and Quality

Sequencing Technologies in Microbial Food Safety and Quality Book
Author : Devarajan Thangardurai,Leo M.L. Nollet,Saher Islam,Jeyabalan Sangeetha
Publisher : CRC Press
Release : 2021-04-14
ISBN : 1000376397
Language : En, Es, Fr & De

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Book Description :

Molecular landscape for food safety analysis is rapidly revolutionizing because of high resolution and value added resulting analysis of next-generation sequencing (NGS) approaches. These modern sequencing technologies drive worldwide advancements in food safety and quality. Sequencing Technologies in Microbial Food Safety and Quality reviews several practices in that NGS contributes to foodborne pathogens functional characterization, management and control. This book focuses on potential uses of sequencing technologies in microbial food safety and quality and highlights present challenges in the food industry. Key Features: Application of whole genome sequencing technologies in disease diagnostics, surveillance, transmission, and outbreak investigation in food sector Impact of sequencing tools in the area of food microbiology Recent advances in genomic DNA sequencing of microbial species from single cells Microbial bioinformatics resources for food microbiology High-throughput insertion tracking by deep sequencing for the analysis of food pathogens This book includes contributions from experts who have manipulated sequencing tools in relation to microbial food safety and quality. Presenting comprehensive details about NGS approaches in food science, this book is an updated and reliable reference for food scientists, nutritionists, food product investigators to study and implement the sequencing technologies for developing quality and safe food. This book would also serve as informative resource for food industry officials, government researchers, food science or food nutrition students who seek comprehensive knowledge about the role of emerging sequencing technologies in revolutionizing the food industry.

High Throughput Next Generation Sequence Analysis for Food Microbiologists

High Throughput Next Generation Sequence Analysis for Food Microbiologists Book
Author : Bart C Weimer,Dylan Storey
Publisher : Academic Press
Release : 2017-01-01
ISBN : 0128092270
Language : En, Es, Fr & De

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Book Description :

High Throughput Next Generation Sequence Analysis for Food Microbiologists presents the evolution of metagenomics and metaRNAseq as tools for use in foods to describe the microbiome of raw materials and the effect of processing conditions to change the microbiome for food safety and food spoilage. This reference offers information on the wide spread use of microbial genomes that are available today. The intent of this volume is to provide a resource for researchers, scientists, upper division students interested in using WGS and metagenomics for food microbiome studies. Presents broad and underserved implications for food microbiology’s fast moving area of Next Generation Sequencing (NGS) Provides detailed descriptions of the context, directions, and methods that are at the leading edge of food microbiology that aligns with culture independent methods in complex systems, such as food streams Includes chapters that span spoilage organisms, fermentation, and pathogens

Encyclopedia of Food Microbiology

Encyclopedia of Food Microbiology Book
Author : Carl A. Batt
Publisher : Academic Press
Release : 2014-04-02
ISBN : 0123847338
Language : En, Es, Fr & De

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Book Description :

Written by the world's leading scientists and spanning over 400 articles in three volumes, the Encyclopedia of Food Microbiology, Second Edition is a complete, highly structured guide to current knowledge in the field. Fully revised and updated, this encyclopedia reflects the key advances in the field since the first edition was published in 1999 The articles in this key work, heavily illustrated and fully revised since the first edition in 1999, highlight advances in areas such as genomics and food safety to bring users up-to-date on microorganisms in foods. Topics such as DNA sequencing and E. coli are particularly well covered. With lists of further reading to help users explore topics in depth, this resource will enrich scientists at every level in academia and industry, providing fundamental information as well as explaining state-of-the-art scientific discoveries. This book is designed to allow disparate approaches (from farmers to processors to food handlers and consumers) and interests to access accurate and objective information about the microbiology of foods Microbiology impacts the safe presentation of food. From harvest and storage to determination of shelf-life, to presentation and consumption. This work highlights the risks of microbial contamination and is an invaluable go-to guide for anyone working in Food Health and Safety Has a two-fold industry appeal (1) those developing new functional food products and (2) to all corporations concerned about the potential hazards of microbes in their food products

Food and Feed Safety Systems and Analysis

Food and Feed Safety Systems and Analysis Book
Author : Steven C Ricke,Griffiths G. Atungulu,Chase Rainwater,Si Hong Park
Publisher : Academic Press
Release : 2017-10-27
ISBN : 0128498889
Language : En, Es, Fr & De

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Book Description :

Food and Feed Safety Systems and Analysis discusses the integration of food safety with recent research developments in food borne pathogens. The book covers food systems, food borne ecology, how to conduct research on food safety and food borne pathogens, and developing educational materials to train incoming professionals in the field. Topics include data analysis and cyber security for food safety systems, control of food borne pathogens and supply chain logistics. The book uniquely covers current food safety perspectives on integrating food systems concepts into pet food manufacturing, as well as data analyses aspects of food systems. Explores cutting edge research about emerging issues associated with food safety Includes new research on understanding foodborne Salmonella, Listeria and E. coli Presents foodborne pathogens and whole genome sequencing applications Provides concepts and issues related to pet and animal feed safety

The Microbiology of Safe Food

The Microbiology of Safe Food Book
Author : Stephen J. Forsythe
Publisher : John Wiley & Sons
Release : 2019-11-11
ISBN : 1119405254
Language : En, Es, Fr & De

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Book Description :

Exploring food microbiology, its impact upon consumer safety, and the latest strategies for reducing its associated risks As our methods of food production advance, so too does the need for a fuller understanding of food microbiology and the critical ways in which it influences food safety. The Microbiology of Safe Food satisfies this need, exploring the processes and effects of food microbiology with a detailed, practical approach. Examining both food pathogens and spoilage organisms, microbiologist Stephen J. Forsythe covers topics ranging from hygiene regulations and product testing to microbiological criteria and sampling plans. This third edition has been thoroughly revised to cater to the food scientists and manufacturers of today, addressing such new areas as: Advances in genomic analysis techniques for key organisms, including E. coli, Salmonella, and L. monocytogenes Emerging information on high-throughput sequencing and genomic epidemiology based on genomic analysis of isolates Recent work on investigations into foodborne infection outbreaks, demonstrating the public health costs of unsafe food production Updates to the national and international surveillance systems, including social media Safe food for consumers is the ultimate goal of food microbiology. To that end, The Microbiology of Safe Food focuses on the real-world applications of the latest science, making it an essential companion for all those studying and working in food safety.

High Throughput Next Generation Sequencing

High Throughput Next Generation Sequencing Book
Author : Young Min Kwon,Steven C. Ricke
Publisher : Humana Press
Release : 2011-03-23
ISBN : 9781617790881
Language : En, Es, Fr & De

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Book Description :

Due to their novel concepts and extraordinary high-throughput sequencing capacity, the “next generation sequencing” methods allow scientists to grasp system-wide landscapes of the complex molecular events taking place in various biological systems, including microorganisms and microbial communities. These methods are now being recognized as essential tools for a more comprehensive and deeper understanding of the mechanisms underlying many biological processes. In High-Throughput Next Generation Sequencing: Methods and Applications, experts in the field explore the most recent advances in the applications of next generation sequencing technologies with an emphasis on microorganisms and their communities; however, the methods described in this book will also offer general applications relevant to the study of any living organisms. Written in the highly successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Comprehensive and cutting-edge, High-Throughput Next Generation Sequencing: Methods and Applications is an excellent collection of chapters to aid all scientists who wish to apply these innovative research tools to enhance their own pursuits in microbiology and also biology in general.

Advances in Food and Nutrition Research

Advances in Food and Nutrition Research Book
Author : Fidel Toldra
Publisher : Academic Press
Release : 2020-02-05
ISBN : 0128204710
Language : En, Es, Fr & De

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Book Description :

Advances in Food and Nutrition Research, Volume 91 provides updated knowledge about nutrients in foods and how to avoid their deficiency, especially for those essential nutrients that should be present in the diet to reduce disease risk and optimize health. Specific topics covered in this new release include Polyphenols in the management of brain disorders: Modulation of the microbiota-gut-brain axis, Protein and amino acids in skeletal muscle health in aging, Chemical composition and health properties of coffee and coffee by-products, Seaweed and seaweed-derived metabolites as prebiotics, Bioactive potential of fruit and vegetable wastes, and more. The series provides the latest advances on the identification and characterization of emerging bioactive compounds with putative health benefits, as well as up-to-date information on food science, including raw materials, production, processing, distribution and consumption. Contains contributions that have been carefully selected based on their vast experience and expertise on the subject Includes updated, in-depth, and critical discussions of available information, giving the reader a unique opportunity to learn Encompasses a broad view of the topics at hand

Insights of Fermented Foods and Beverages Microbiology and Health Promoting Benefits

Insights of Fermented Foods and Beverages  Microbiology and Health Promoting Benefits Book
Author : Jyoti Prakash Tamang,Patricia Lappe-Oliveras,Baltasar Mayo
Publisher : Frontiers Media SA
Release : 2022-02-18
ISBN : 288974440X
Language : En, Es, Fr & De

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Book Description :

Download Insights of Fermented Foods and Beverages Microbiology and Health Promoting Benefits book written by Jyoti Prakash Tamang,Patricia Lappe-Oliveras,Baltasar Mayo, available in PDF, EPUB, and Kindle, or read full book online anywhere and anytime. Compatible with any devices.

Fermented Meat Products

Fermented Meat Products Book
Author : Nevijo Zdolec
Publisher : CRC Press
Release : 2017-11-22
ISBN : 1315352834
Language : En, Es, Fr & De

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Book Description :

This book presents recent developments on the health and safety of fermented meat products. It discusses health aspects of select topics in fermented meat microbiology, veterinary public health, chemistry, technology, biotechnology, nutrition, toxicology, and quality assurance, and gives a broad insight into the product’s safety and health hazards. The book considers the safety of fermented meat products through a whole food chain approach. It focuses on requirements for strict hygienic and technological procedures to prevent potential risk during the production of ready-to-eat products. The book does not aim to serve as negative publicity for meat products. Just the opposite – it points out to the complexity of prevention and control of potential hazards/risks in the production which greatly contributes to a higher total value of fermented meat products. This reference book is a result of collaborative efforts of a number of distinguished authors with international reputation from renowned institutions and it is intended to both academic and professional audience.

Food Microbiology

Food Microbiology Book
Author : Michael P. Doyle,Francisco Diez-Gonzalez,Colin Hill
Publisher : John Wiley & Sons
Release : 2020-07-10
ISBN : 1555819974
Language : En, Es, Fr & De

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Book Description :

Since its introduction in 1997, the purpose of Food Microbiology: Fundamentals and Frontiers has been to serve as an advanced reference that explores the breadth and depth of food microbiology. Thoroughly updated, the new Fifth Edition adds coverage of the ever-expanding tool chest of new and extraordinary molecular methods to address many of the roles that microorganisms play in the production, preservation, and safety of foods. Sections in this valuable reference cover material of special significance to food microbiology such as: stress response mechanisms, spores, and the use of microbiological criteria and indicator organisms commodity-oriented discussion of types of microbial food spoilage and approaches for their control the major foodborne pathogens, including diseases, virulence mechanisms, control measures, and up-to-date details on molecular biology techniques state-of-the-science information on food preservation approaches, including natural antimicrobials and the use of bacteriophages in controlling foodborne pathogens beneficial microbes used in food fermentations and to promote human and animal health updated chapters on current topics such as antimicrobial resistance, predictive microbiology, and risk assessment This respected reference provides up-to-the-minute scientific and technical insights into food production and safety, readily available in one convenient source.

Food Molecular Microbiology

Food Molecular Microbiology Book
Author : Spiros Paramithiotis,Jayanta Kumar Patra
Publisher : CRC Press
Release : 2019-02-14
ISBN : 1351615106
Language : En, Es, Fr & De

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Book Description :

With the advances in the field of molecular biology, new tools make it possible to conduct in-depth studies in food microbial communities from a molecular perspective. Information from genomic, transcriptomic, proteomic and metabolomic studies can be integrated through bioinformatic applications, thereby improving our understanding of the interactions between biotic and abiotic factors and concomitantly the physiology of starter cultures, spoilage and pathogenic microbiota. Improvements in the speed, accuracy and reliability of food quality and safety assessment have made the foundation stronger for future developments including the exploitation of gene networks and applications of nanotechnology and systems biology. This book reviews all these developments, provides an integrated view of the subject and helps in identifying areas of future development.

Advances in Vinegar Production

Advances in Vinegar Production Book
Author : Argyro Bekatorou
Publisher : CRC Press
Release : 2019-09-11
ISBN : 1351208454
Language : En, Es, Fr & De

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Book Description :

In industrial vinegar production, there are three main types of methods involved; the slow, handcrafted, traditional method ("Orleans" or "French" method), and the rapid submerged and generator methods. The current trend is to fuse traditional techniques with state-of-the-art technologies, and a variety of approaches have been developed to increase fermentation efficiency and reduce cost and fermentation time. This book reports on all the recent innovations in vinegar production, and compares them to the traditional submerged fermentation systems. The new trends on raw materials, substrate pretreatment strategies, alcoholic fermentation, and acetitification systems are also reviewed.

Molecular Food Microbiology

Molecular Food Microbiology Book
Author : Dongyou Liu
Publisher : CRC Press
Release : 2021-04-11
ISBN : 1351120379
Language : En, Es, Fr & De

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Book Description :

The elucidation of DNA double helix in 1953 and the publication of DNA cloning protocol in 1973 have put wings under the sail of molecular biology, which has since quietly revolutionized many fields of biological science, including food microbiology. Exploiting the power and versatility of molecular technologies, molecular food microbiology extends and greatly improves on phenotypically based food microbiology, leading to the development of better diagnostics for foodborne infections and intoxications, and contributing to the design of more effective therapeutics and prophylaxes against foodborne diseases. Forming part of the Food Microbiology series, Molecular Food Microbiology provides a state of art coverage on molecular techniques applicable to food microbiology. While the introductory chapter contains an overview on the principles of current DNA, RNA and protein techniques and discusses their utility in helping solve practical problems that food microbiology is facing now and in the future, the remaining chapters present detailed moleuclar analyses of selective foodborne viruses, bacteria, fungi and parasites. Key Features: Contains a state of art overview on moleuclar techniques applicable to food microbiology research and development Presents in-depth molecular analysis of selective foodborne viruses, bacteria, fungi and parasites Highlights the utility of molecular tecniques for accurate diagnosis and effective control of foodborne diseases Includes expert contributions from international scientists involved in molecular food microbiology research Represents a highly informative textbook for students majoring in food, medical, and veterinary microbiology Offers a contemporary reference for scholars and educators wishing to keep abreast with the latest developments in molecular food microbiology With contributions from international scientists involved in molecular food microbiology research, this book constitutes an informative textbook for undergraduates and postgraduates majoring in food, medical, and veterinary microbiology; represents an indispensable guide for food, medical, and veterinary scientists engaged in molecular food microbiology research and development; and offers a contemporary update for scholars and educators trying to keep in touch with the latest developments in molecular food microbiology.

Chemical Analysis of Food

Chemical Analysis of Food Book
Author : Yolanda Pico
Publisher : Academic Press
Release : 2020-06-16
ISBN : 0128132671
Language : En, Es, Fr & De

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Book Description :

Chemical Analysis of Food: Techniques and Applications, Second Edition, reviews the latest technologies and challenges in all stages of food analysis, from selecting the right approach, how to perform analytic procedures, and how to measure and report the results. The book is structured in two parts: the first describes the role of the latest developments in analytical and bio-analytical techniques, with the second reviewing innovative applications and issues in food analysis. The techniques discussed range from the non-invasive and non-destructive, such as infrared spectroscopy and ultrasound, to newly emerging areas, such as nanotechnology, biosensors and electronic noses and tongues. This thoroughly updated edition includes new chapters on ambient mass spectrometry, imaging techniques, omics approaches in food analysis, natural toxins analysis, food contact materials, nanomaterials and organic foods. All chapters are updated or rewritten to bring the content completely up-to-date. Reviews the attributes, benefits, limits and potential of all relevant analytic modalities, including spectroscopy, ultrasound and nanotechnology applications Provides in-depth coverage of each technology, including near-infrared, mid-infrared, and Raman spectroscopy, low intensity ultrasound, microfluidic devices and biosensors, electronic noses and tongues, mass spectrometry and molecular techniques Outlines practical solutions to challenging problems in food analysis, including how to combine techniques for improved efficacy Covers all relevant applications of food analysis, such as traceability, authenticity and fraud, biologically-active food components, novel food and nutritional supplements, flavors and fragrances, and contaminants and allergens Provides researchers with a single source of current research and includes contributions from internationally renowned experts in food science and technology and nutrition

New Trends in Environmental Engineering Agriculture Food Production and Analysis

New Trends in Environmental Engineering  Agriculture  Food Production  and Analysis Book
Author : Wojciech Janczukowicz,Joanna Rodziewicz,Anna Iwaniak
Publisher : MDPI
Release : 2021-09-02
ISBN : 3036511245
Language : En, Es, Fr & De

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Book Description :

This Special Issue presents the latest advances in agriculture, aquaculture, food technology and environmental protection and engineering, discussing, among others, the following issues: new technologies in water, stormwater and wastewater treatment; water saving, lake restoration; new sludge and waste management systems; biodiesel production from animal fat waste; the microbiological quality of compound fish feeds for aquaculture; the role of technological processes to improve food quality and safety; new trends in the analysis of food and food components including in vitro, in vivo, and in silico analyses; and functional and structural aspects of bioactivities of food molecules.

Next Generation Sequencing

Next Generation Sequencing Book
Author : Jerzy Kulski
Publisher : BoD – Books on Demand
Release : 2016-01-14
ISBN : 9535122401
Language : En, Es, Fr & De

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Book Description :

Next generation sequencing (NGS) has surpassed the traditional Sanger sequencing method to become the main choice for large-scale, genome-wide sequencing studies with ultra-high-throughput production and a huge reduction in costs. The NGS technologies have had enormous impact on the studies of structural and functional genomics in all the life sciences. In this book, Next Generation Sequencing Advances, Applications and Challenges, the sixteen chapters written by experts cover various aspects of NGS including genomics, transcriptomics and methylomics, the sequencing platforms, and the bioinformatics challenges in processing and analysing huge amounts of sequencing data. Following an overview of the evolution of NGS in the brave new world of omics, the book examines the advances and challenges of NGS applications in basic and applied research on microorganisms, agricultural plants and humans. This book is of value to all who are interested in DNA sequencing and bioinformatics across all fields of the life sciences.

Rapid and Cost effective Technologies to Detect the Pathogens in Food and Environment

Rapid and Cost effective Technologies to Detect the Pathogens in Food and Environment Book
Author : Xuejun Ma,Yi-Wei Tang,Xiyang Wu,Joseph Oliver Falkinham
Publisher : Frontiers Media SA
Release : 2022-07-13
ISBN : 2889765644
Language : En, Es, Fr & De

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Book Description :

Dr. Yi-Wei Tang is currently an employee of Danaher/Cepheid, a biotech company produces in vitro diagnostic devices. The other Topic Editors declare no competing interests with regard to the Research Topic project

Encyclopedia of Bioinformatics and Computational Biology

Encyclopedia of Bioinformatics and Computational Biology Book
Author : Anonim
Publisher : Elsevier
Release : 2018-08-21
ISBN : 0128114320
Language : En, Es, Fr & De

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Book Description :

Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases

Recent Discoveries in Human Serious Foodborne Pathogenic Bacteria Resurgence Pathogenesis and Control Strategies

Recent Discoveries in Human Serious Foodborne Pathogenic Bacteria  Resurgence  Pathogenesis  and Control Strategies Book
Author : Lanming Chen,Walid Alali
Publisher : Frontiers Media SA
Release : 2019-02-06
ISBN : 2889457206
Language : En, Es, Fr & De

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Book Description :

Food is the first necessity for humans to survive with huge amounts of food consumed daily worldwide. Globalization of food industry results in an increasingly complex food chain, making food safety a universal issue. Many millions of people in the world become sick while hundreds of thousand die annually due to consumption of contaminated food. Pathogenic bacteria contaminate food at any stages in the food chain, including production, processing, supplying, and storage. The most commonly known bacterial pathogens associated with human foodborne diseases worldwide are Salmonella enterica, Campylobacter jejuni, Escherichia coli, Listeria monocytogenes, Cronobacter sakazakii, Vibrio cholerae, and Vibrio parahaemolyticus. This eBook includes publications on recent discoveries in genetic diversity, prevalence, resistance and novel transmission vectors; molecular mechanisms underlying the pathogenesis; and new compounds and treatment strategies for better control of the human foodborne pathogenic bacteria. The information in the articles supports the urgent need for improving food safety and public health, particularly in globalization background.