Genomics In Aquaculture

Book Description :

Genomics in Aquaculture is a concise, must-have reference that describes current advances within the field of genomics and their applications to aquaculture. Written in an accessible manner for anyone—non-specialists to experts alike—this book provides in-depth coverage of genomics spanning from genome sequencing, to transcriptomics and proteomics. It provides, for ease of learning, examples from key species most relevant to current intensive aquaculture practice. Its coverage of minority species that have a specific biological interest (e.g., Pleuronectiformes) makes this book useful for countries that are developing such species. It is a robust, practical resource that covers foundational, functional, and applied aspects of genomics in aquaculture, presenting the most current information in a field of research that is rapidly growing. Provides the latest scientific methods and technologies to maximize efficiencies for healthy fish production, with summary tables for quick reference Offers an extended glossary of technical and methodological terms to help readers better understand key biological concepts Describes state-of-the-art technologies, such as transcriptomics and epigenomics, currently under development for future perspective of the field Covers minority species that have a specific biological interest (e.g., Pleuronectiformes), making the book useful to countries developing such species

Book Description :

Genomics has revolutionized biological research over the course of the last two decades. Genome maps of key agricultural species have offered increased understanding of the structure, organization, and evolution of animal genomes. Building upon this foundation, researchers are now emphasizing research on genome function. Published with the World Aquaculture Society, Functional Genomics in Aquaculture looks at the advances in this field as they directly relate to key traits and species in aquaculture production. Functional Genomics in Aquaculture opens with two chapters that provide a useful general introduction to the field of functional genomics. The second section of the book focuses on key production traits such as growth, development, reproduction, nutrition, and physiological response to stress and diseases. The final five chapters focus on a variety of key aquaculture species. Examples looking at our understanding of the functional genomes of salmonids, Mediterranean sea bass, Atlantic cod, catfish, shrimp, and molluscs, are included in the book. Providing valuable insights and discoveries into the functional genomes of finfish and shellfish species, Functional Genomics in Aquaculture, will be an invaluable resource to researchers and professionals in aquaculture, genetics, and animal science.

Book Description :

The foundation of quantitative genetics theory was developed during the last century and facilitated many successful breeding programs for cultivated plants and t- restrial livestock. The results have been almost universally impressive, and today nearly all agricultural production utilises genetically improved seed and animals. The aquaculture industry can learn a great deal from these experiences, because the basic theory behind selective breeding is the same for all species. The ?rst published selection experiments in aquaculture started in 1920 s to improve disease resistance in ?sh, but it was not before the 1970 s that the ?rst family based breeding program was initiated for Atlantic salmon in Norway by AKVAFORSK. Unfortunately, the subsequent implementation of selective breeding on a wider scale in aquaculture has been slow, and despite the dramatic gains that have been demonstrated in a number of species, less than 10% of world aquaculture production is currently based on improved stocks. For the long-term sustainability of aquaculture production, there is an urgent need to develop and implement e- cient breeding programs for all species under commercial production. The ability for aquaculture to successfully meet the demands of an ever increasing human p- ulation, will rely on genetically improved stocks that utilise feed, water and land resources in an ef?cient way. Technological advances like genome sequences of aquaculture species, and advanced molecular methods means that there are new and exciting prospects for building on these well-established methods into the future.

Book Description :

To feed the growing world population, water is looked upon as a major source of food production. This book is an attempt to bring out a comprehensive volume on Fish Transgenesis, Chromosome Engineering and Sex Control, Molecular Endocrinology, Microbal Diseases and Vaccines, and Bioactive Compounds.

Book Description :

Following the extremely well-received structure of the firstedition, this carefully revised and updated new edition nowincludes much new information of vital importance to those workingand researching in the fisheries and aquaculture industries. Commencing with chapters covering genetic variation and how itcan be measured, the authors then look at genetic structure innatural populations, followed by a new chapter covering genetics inrelation to population size and conservation issues. Geneticvariation of traits and triploids and the manipulation of ploidyare fully covered, and another new chapter is included, entitled'From Genetics to Genomics'. The book concludes with a chaptercovering the impact of genetic engineering in aquaculture. With the inclusion of a wealth of up-to-date information, newtext and figures and the inclusion of a third author, PierreBoudry, the second edition of Biotechnology and Genetics inFisheries and Aquaculture provides an excellent text andreference of great value and use to upper level students andprofessionals working across fish biology, aquatic sciences,fisheries, aquaculture, genetics and biotechnology. Libraries inall universities and research establishments where biologicalsciences, fisheries and aquaculture are studied and taught shouldhave several copies of this excellent new edition on theirshelves. Completely updated, revised and expanded new edition Subject area of ever increasing importance Expanded authorship Commercially useful information for fish breeders

Book Description :

This volume, the proceedings of the Fourth International Symposium on Genetics in Aquaculture, builds on the foundations laid down at the first symposium, held in Galway, Ireland in 1982 (Aquaculture, Volume 33), as well as those laid down at the second, held in Davis, California, USA in 1985 (Genetics in Aquaculture II), and the third, held in Trondheim, Norway in 1988 (Genetics in Aquaculture III). It addresses specific problems and developments in this field, demonstrating the tremendous breadth of research activity as well as the complexity of issues in aquaculture genetics. This book will be of great value to aquaculturists, fisheries scientists and marine biologists. (The above-mentioned proceedings of the first three conferences are still available).

Book Description :

From a global perspective aquaculture is an activity related to food production with large potential for growth. Considering a continuously growing population, the efficiency and sustainability of this activity will be crucial to meet the needs of protein for human consumption in the near future. However, for continuous enhancement of the culture of both fish and shellfish there are still challenges to overcome, mostly related to the biology of the cultured species and their interaction with (increasingly changing) environmental factors. Examples of these challenges include early sexual maturation, feed meal replacement, immune response to infectious diseases and parasites, and temperature and salinity tolerance. Moreover, it is estimated that less than 10% of the total aquaculture production in the world is based on populations genetically improved by means of artificial selection. Thus, there is considerable room for implementing breeding schemes aimed at improving productive traits having significant economic impact. By far the most economically relevant trait is growth rate, which can be efficiently improved by conventional genetic selection (i.e. based on breeding values of selection candidates). However, there are other important traits that cannot be measured directly on selection candidates, such as resistance against infectious and parasitic agents and carcass quality traits (e.g. fillet yield and meat color). However, these traits can be more efficiently improved using molecular tools to assist breeding programs by means of marker-assisted selection, using a few markers explaining a high proportion of the trait variation, or genomic selection, using thousands of markers to estimate genomic breeding values. The development and implementation of new technologies applied to molecular biology and genomics, such as next-generation sequencing methods and high-throughput genotyping platforms, are allowing the rapid increase of availability of genomic resources in aquaculture species. These resources will provide powerful tools to the research community and will aid in the determination of the genetic factors involved in several biological aspects of aquaculture species. In this regard, it is important to establish discussion in terms of which strategies will be more efficient to solve the primary challenges that are affecting aquaculture systems around the world. The main objective of this Research Topic is to provide a forum to communicate recent research and implementation strategies in the use of genomics in aquaculture species with emphasis on (1) a better understanding of fish and shellfish biological processes having considerable impact on aquaculture systems; and (2) the efficient incorporation of molecular information into breeding programs to accelerate genetic progress of economically relevant traits.

Book Description :

In a scientific pursuit there is continual food for discovery and wonder. M. Shelley (1818) Genomic analysis of aquatic species has long been overshadowed by the superb activity of the human genome project. However, aquatic genomics is now in the limelight as evidenced by the recent accomplishment of fugu genome sequencing, which provided a significant foundation for comparative fish genomics. Undoubt edly, such progress will provide an exciting and unparalleled boost to our knowl edge of the genetics of aquatic species. Thus, aquatic genomics research has become a promising new research field with an impact on the fishery industry. It is notewor thy that the Food and Agriculture Organization (FAO) of the United Nations has projected that current global fisheries production will soon become insufficient to supply the increasing world population and that aquaculture has a great potential to fulfill that demand. This book, Aquatic Genomic. ~: Steps Toward a Great Future, was designed as a collection of advanced knowledge in aquatic genomics and biological sciences. It covers a variety of aquatic organisms including fish, crustaceans, and shellfish, and describes various advanced methodologies, including genome analysis, gene map ping, DNA markers, and EST analysis. Also included are discussions of many sub jects such as regulation of gene expression, stress and immune responses, sex differ entiation, hormonal control, and transgenic fishes.

Book Description :

Bioinformatics derives knowledge from computer analysis of biological data. In particular, genomic and transcriptomic datasets are processed, analysed and, whenever possible, associated with experimental results from various sources, to draw structural, organizational, and functional information relevant to biology. Research in bioinformatics includes method development for storage, retrieval, and analysis of the data. Bioinformatics in Aquaculture provides the most up to date reviews of next generation sequencing technologies, their applications in aquaculture, and principles and methodologies for the analysis of genomic and transcriptomic large datasets using bioinformatic methods, algorithm, and databases. The book is unique in providing guidance for the best software packages suitable for various analysis, providing detailed examples of using bioinformatic software and command lines in the context of real world experiments. This book is a vital tool for all those working in genomics, molecular biology, biochemistry and genetics related to aquaculture, and computational and biological sciences.

Book Description :

This book is for the students starting their research projects in the field of metagenomics, for researchers interested in the new developments and applications in this field; and for teachers involved in teaching this subject. The book is divided into three sections as indicated from its title, namely; the basics of metagenomics, metagenomic analysis, and applications of metagenomics. It covers the basics of metagenomics from its history and background, to the analysis of metagenomic data as well as its recent applications in different fields. The book contains excellent texts at both the introductory and advanced levels, that describe the latest metagenomic approaches and applications, from sampling to data analysis for taxonomic, environmental, and medical studies. Finally, the publication of this book was an interesting journey for me and I hope the readers will enjoy reading it.

Book Description :

This important book looks at a broad spectrum of biotech research efforts and their applications to the aquaculture industry. Aquaculture Biotechnology provides key reviews that look at the application of genetic, cellular, and molecular technologies to enable fish farmers to produce a more abundant, resilient, and healthier supply of seafood. Aquaculture Biotechnology is divided into seven sections and nineteen chapters that cover topics ranging from broodstock improvement to fish health and gene transfer. With chapters provided by leading researchers and skillfully edited by top scientists in the field, this will be a valuable tool to researchers, producers, and students interested in better understanding this dynamic field of aquaculture.

Book Description :

Genomics is a rapidly growing scientific field with applications ranging from improved disease resistance to increased rate of growth. Aquaculture Genome Technologies comprehensively covers the field of genomics and its applications to the aquaculture industry. This volume looks to bridge the gap between a basic understanding of genomic technology to its practical use in the aquaculture industry.

Book Description :

A comprehensive resource that covers all the aspects of sex control in aquaculture written by internationally-acclaimed scientists Comprehensive in scope, Sex Control in Aquaculture first explains the concepts and rationale for sex control in aquaculture, which serves different purposes. The most important are: to produce monosex stocks to rear only the fastest-growing sex in some species, to prevent precocious or uncontrolled reproduction in other species and to aid in broodstock management. The application of sex ratio manipulation for population control and invasive species management is also included. Next, this book provides detailed and updated information on the underlying genetic, epigenetic, endocrine and environmental mechanisms responsible for the establishment of the sexes, and explains chromosome set manipulation techniques, hybridization and the latest gene knockout approaches. Furthermore, the book offers detailed protocols and key summarizing information on how sex control is practiced worldwide in 35 major aquaculture species or groups, including fish and crustaceans, and puts the focus on its application in the aquaculture industry. With contributions from an international panel of leading scientists, Sex Control in Aquaculture will appeal to a large audience: aquaculture/fisheries professionals and students, scientists or biologists working with basic aspects of fish/shrimp biology, growth and reproductive endocrinology, genetics, molecular biology, evolutionary biology, and R&D managers and administrators. This text explores sex control technologies and monosex production of commercially-farmed fish and crustacean species that are highly in demand for aquaculture, to improve feed utilization efficiency, reduce energy consumption for reproduction and eliminate a series of problems caused by mixed sex rearing. Thus, this book: Contains contributions from an international panel of leading scientists and professionals in the field Provides comprehensive coverage of both established and new technologies to control sex ratios that are becoming more necessary to increase productivity in aquaculture Includes detailed coverage of the most effective sex control techniques used in the world's most important commercially-farmed species Sex Control in Aquaculture is the comprehensive resource for understanding the biological rationale, scientific principles and real-world practices in this exciting and expanding field.

Book Description :

Although aquaculture as a biological production system has a long history, systematic and efficient breeding programs to improve economically important traits in the farmed species have rarely been utilized until recently, except for salmonid species. This means that the majority of aquaculture production (more than 90 %) is based on genetically unimproved stocks. In farm animals the situation is vastly different: practically no terrestrial farm production is based on genetically unimproved and undomesticated populations. This difference between aquaculture and livestock production is in spite of the fact that the basic elements of breeding theory are the same for fish and shellfish as for farm animals. One possible reason for the difference is the complexity of reproductive biology in aquatic species, and special consideration needs to be taken in the design of breeding plans for these species. Since 1971 AKVAFORSK, has continuously carried out large scale breeding research projects with salmonid species, and during the latest 15 years also with a number of fresh water and marine species. Results from this work and the results from other institutions around the world have brought forward considerable knowledge, which make the development of efficient breeding programs feasible. The genetic improvement obtained in selection programs for fish and shellfish is remarkable and much higher than what has been achieved in terrestrial farm animals.

Book Description :

Advances in Tuna Aquaculture: From Hatchery to Market provides detailed overviews on the current status of tuna fisheries, fattening, and farming practices, as well as advances in closed-cycle tuna aquaculture. Contributors are renowned scientists, internationally recognized as authorities in their fields. This book addresses all basic and applied aspects of tuna aquaculture, presenting and discussing the global status of tuna fisheries, reproduction, broodstock management, spawning, larval rearing and early developmental stages including nursery and grow out methods. It presents incorporates the most comprehensive and updated data, statistics, and trends in tuna fisheries and aquaculture, covering and addresses a variety of topics ranging fromfrom endocrinology, nutrition, diseases, and genetics to economics and markets. It covers describes recent up-to-date progress on tuna aquaculture and hatchery development. It also provides a synopsisn overview of the challenges presently confronted by tuna aquaculturists,facing tuna aquaculture and and offers innovative views on the challengesbottle-neck issues faced by the industry with the current shift from fisheries to fattening to closed-cycle aquaculture. This is the first book to encompass all aspects related to the tuna aquaculture industry, and merges them into a state-of-the-art compendium that will serve as seminal reference for students, researchers, and professionals working with tuna biology, fisheries, and aquaculture worldwide. Incorporates and reviews the most recent information on tuna fisheries and aquaculture Presents the most innovative production technologies in tuna aquaculture, from hatchery to market Includes important information on tuna, derived from industry experience and academic research on larval rearing technology and grow out operations Encompasses and discusses key topics such as genetics, diseases, nutrition, endocrinology, and reproduction, as well as developments, challenges, and future opportunities in tuna aquaculture Provides the latest scientific methods and technologies to maximize efficiencies and production Presents the independent and collective assessments, viewpoints, and visions of various scientists, all internationally recognized as authorities in the field

Book Description :

The conservation, sustainable use and development of aquatic genetic resources (AqGR) is critical to the future supply of fish. The State of the World’s Aquatic Genetic Resources for Food and Agriculture is the first ever global assessment of these resources, with the scope of this first Report being limited to cultured AqGR and their wild relatives, within national jurisdiction. The Report draws on 92 reports from FAO member countries and five specially commissioned thematic background studies. The reporting countries are responsible for 96 percent of global aquaculture production. The Report sets the context with a review of the state of world’s aquaculture and fisheries and includes overviews of the uses and exchanges of AqGR, the drivers and trends impacting AqGR and the extent of ex situ and in situ conservation efforts. The Report also investigates the roles of stakeholders in AqGR and the levels of activity in research, education, training and extension, and reviews national policies and the levels of regional and international cooperation on AqGR. Finally, needs and challenges are assessed in the context of the findings from the data collected from the countries. The Report represents a snapshot of the present status of AqGR and forms a valuable technical reference document, particularly where it presents standardized key terminology and concepts.

Book Description :

Genomics and Biotechnological Advances in Veterinary, Poultry, and Fisheries is a comprehensive reference for animal biotechnologists, veterinary clinicians, fishery scientists, and anyone who needs to understand the latest advances in the field of next generation sequencing and genomic editing in animals and fish. This essential reference provides information on genomics and the advanced technologies used to enhance the production and management of farm and pet animals, commercial and non-commercial birds, and aquatic animals used for food and research purposes. This resource will help the animal biotechnology research community understand the latest knowledge and trends in this field. Presents biological applications of cattle, poultry, marine and animal pathogen genomics Discusses the relevance of biomarkers to improve farm animals and fishery Includes recent approaches in cloning and transgenic cattle, poultry and fish production

Book Description :

Atlantic Salmon is a cultural icon throughout its North Atlantic range; it is the focus of probably the World’s highest profile recreational fishery and is the basis for one of the World’s largest aquaculture industries. Despite this, many wild stocks of salmon are in decline and underpinning this is a dearth of information on the nature and extent of population structuring and adaptive population differentiation, and its implications for species conservation. This important new book will go a long way to rectify this situation by providing a thorough review of the genetics of Atlantic salmon. Sponsored by the European Union and the Atlantic Salmon Trust, this book comprises the work of an international team of scientists, carefully integrated and edited to provide a landmark book of vital interest to all those working with Atlantic salmon.

Book Description :

Fish have been a major component of our diet and it has been suggested that fish/seafood consumption contributed to the development of the human brain, and this together with the acquisition of bipedalism, perhaps made us what we are. In the modern context global fish consumption is increasing. However, unlike our other staples, until a few years back the greater proportion of our fish supplies were of a hunted origin. This scenario is changing and a greater proportion of fish we consume now is of farmed origin. Aquaculture, the farming of waters, is thought to have originated in China, many millennia ago. Nevertheless, it transformed into a major food sector only since the second half of the last century, and continues to forge ahead, primarily in the developing world. China leads the global aquaculture production in volume, in the number of species that are farmed, and have contributed immensely to transforming the practices from an art to a science. This book attempts to capture some of the key elements and practices that have contributed to the success of Chinese aquaculture. The book entails contributions from over 100 leading experts in China, and provides insights into some aquaculture practices that are little known to the rest of the world. This book will be essential reading for aquaculturists, practitioners, researchers and students, and planners and developers.

Book Description :

Gene expression studies in aquaculture have slowly evolved from the traditional reductionist approach of single gene sequencing to high throughput sequencing (HTS) techniques able to sequence entire genomes of living organisms. The upcoming of HTS techniques has led to emergence of metagenomics, nutrigenomics, epigenetics and other omics technologies in aquaculture in the last decade. Metagenomics analyses have accelerated the speed at which emerging pathogens are being discovered, thereby contributing to the design of timely disease control strategies in aquaculture. Using metagenomics, it is easy to identify and monitor microbial communities found in different ecosystems. In vaccine production, genomic studies are being used to identify cross neutralizing antigens against variant strains of the same pathogens. In genetics and epigenetics, genomics traits have been identified that are beginning to gain commercial applications in aquaculture. Nutrigenomics have not only enhanced our understanding of the biological markers for nutrition-related diseases, but they have also enhanced our ability to formulate diets able to maintain a stable immune homeostasis in the gut. Overall, herein, we have shown that functional genomics provide multifaceted applications ranging from monitoring microbial communities in aquatic environments to optimizing production systems in aquaculture.