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Data Mining for Bioinformatics Applications

Data Mining for Bioinformatics Applications Book
Author : He Zengyou
Publisher : Woodhead Publishing
Release : 2015-06-09
ISBN : 008100107X
Language : En, Es, Fr & De

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Book Description :

Data Mining for Bioinformatics Applications provides valuable information on the data mining methods have been widely used for solving real bioinformatics problems, including problem definition, data collection, data preprocessing, modeling, and validation. The text uses an example-based method to illustrate how to apply data mining techniques to solve real bioinformatics problems, containing 45 bioinformatics problems that have been investigated in recent research. For each example, the entire data mining process is described, ranging from data preprocessing to modeling and result validation. Provides valuable information on the data mining methods have been widely used for solving real bioinformatics problems Uses an example-based method to illustrate how to apply data mining techniques to solve real bioinformatics problems Contains 45 bioinformatics problems that have been investigated in recent research

Data Mining for Bioinformatics

Data Mining for Bioinformatics Book
Author : Sumeet Dua,Pradeep Chowriappa
Publisher : CRC Press
Release : 2012-11-06
ISBN : 1420004301
Language : En, Es, Fr & De

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Book Description :

Covering theory, algorithms, and methodologies, as well as data mining technologies, Data Mining for Bioinformatics provides a comprehensive discussion of data-intensive computations used in data mining with applications in bioinformatics. It supplies a broad, yet in-depth, overview of the application domains of data mining for bioinformatics to he

Textbook of Machine Learning and Data Mining

Textbook of Machine Learning and Data Mining Book
Author : Hiroshi Mamitsuka
Publisher : Unknown
Release : 2018-09-12
ISBN : 9784991044502
Language : En, Es, Fr & De

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Book Description :

Data-driven approaches, particularly machine learning and data mining, are the main driving force of the current artificial intelligence technology. This book covers a wide variety of methods in machine learning and data mining, dividing them from a viewpoint of data types, which begin with rather simple vectors and end by graphs and also combination of different data types. This book describes standard techniques of machine learning and data mining for each data type, especially focusing on the relevance and difference among them. Also after explaining a series of machine learning methods for seven different data types, this book has a chapter for standard validation methods on empirical results obtained by applying machine learning methods to data. This book can be used for a variety of objectives, including an introductory textbook of studying machine learning and a (first step) book to start machine learning research, etc.

Bioinformatics

Bioinformatics Book
Author : David Edwards,Jason Stajich,David Hansen
Publisher : Springer Science & Business Media
Release : 2009-09-03
ISBN : 9780387927381
Language : En, Es, Fr & De

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Book Description :

Bioinformatics is a relatively new field of research. It evolved from the requirement to process, characterize, and apply the information being produced by DNA sequencing technology. The production of DNA sequence data continues to grow exponentially. At the same time, improved bioinformatics such as faster DNA sequence search methods have been combined with increasingly powerful computer systems to process this information. Methods are being developed for the ever more detailed quantification of gene expression, providing an insight into the function of the newly discovered genes, while molecular genetic tools provide a link between these genes and heritable traits. Genetic tests are now available to determine the likelihood of suffering specific ailments and can predict how plant cultivars may respond to the environment. The steps in the translation of the genetic blueprint to the observed phenotype is being increasingly understood through proteome, metabolome and phenome analysis, all underpinned by advances in bioinformatics. Bioinformatics is becoming increasingly central to the study of biology, and a day at a computer can often save a year or more in the laboratory. The volume is intended for graduate-level biology students as well as researchers who wish to gain a better understanding of applied bioinformatics and who wish to use bioinformatics technologies to assist in their research. The volume would also be of value to bioinformatics developers, particularly those from a computing background, who would like to understand the application of computational tools for biological research. Each chapter would include a comprehensive introduction giving an overview of the fundamentals, aimed at introducing graduate students and researchers from diverse backgrounds to the field and bring them up-to-date on the current state of knowledge. To accommodate the broad range of topics in applied bioinformatics, chapters have been grouped into themes: gene and genome analysis, molecular genetic analysis, gene expression analysis, protein and proteome analysis, metabolome analysis, phenome data analysis, literature mining and bioinformatics tool development. Each chapter and theme provides an introduction to the biology behind the data describes the requirements for data processing and details some of the methods applied to the data to enhance biological understanding.

Multiobjective Genetic Algorithms for Clustering

Multiobjective Genetic Algorithms for Clustering Book
Author : Ujjwal Maulik,Sanghamitra Bandyopadhyay,Anirban Mukhopadhyay
Publisher : Springer Science & Business Media
Release : 2011-09-01
ISBN : 3642166156
Language : En, Es, Fr & De

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Book Description :

This is the first book primarily dedicated to clustering using multiobjective genetic algorithms with extensive real-life applications in data mining and bioinformatics. The authors first offer detailed introductions to the relevant techniques – genetic algorithms, multiobjective optimization, soft computing, data mining and bioinformatics. They then demonstrate systematic applications of these techniques to real-world problems in the areas of data mining, bioinformatics and geoscience. The authors offer detailed theoretical and statistical notes, guides to future research, and chapter summaries. The book can be used as a textbook and as a reference book by graduate students and academic and industrial researchers in the areas of soft computing, data mining, bioinformatics and geoscience.

Bioinformatics

Bioinformatics Book
Author : M. H. Fulekar
Publisher : Springer Science & Business Media
Release : 2009-03-24
ISBN : 1402088809
Language : En, Es, Fr & De

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Book Description :

Bioinformatics, computational biology, is a relatively new field that applies computer science and information technology to biology. In recent years, the discipline of bioinformatics has allowed biologists to make full use of the advances in Computer sciences and Computational statistics for advancing the biological data. Researchers in life sciences generate, collect and need to analyze an increasing number of different types of scientific data, DNA, RNA and protein sequences, in-situ and microarray gene expression including 3D protein structures and biological pathways. This book is aiming to provide information on bioinformatics at various levels. The chapters included in this book cover introductory to advanced aspects, including applications of various documented research work and specific case studies related to bioinformatics. This book will be of immense value to readers of different backgrounds such as engineers, scientists, consultants and policy makers for industry, government, academics and social and private organisations.

Multiobjective Genetic Algorithms for Clustering

Multiobjective Genetic Algorithms for Clustering Book
Author : Ujjwal Maulik,Sanghamitra Bandyopadhyay,Anirban Mukhopadhyay
Publisher : Springer
Release : 2011-09-02
ISBN : 9783642166143
Language : En, Es, Fr & De

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Book Description :

This is the first book primarily dedicated to clustering using multiobjective genetic algorithms with extensive real-life applications in data mining and bioinformatics. The authors first offer detailed introductions to the relevant techniques – genetic algorithms, multiobjective optimization, soft computing, data mining and bioinformatics. They then demonstrate systematic applications of these techniques to real-world problems in the areas of data mining, bioinformatics and geoscience. The authors offer detailed theoretical and statistical notes, guides to future research, and chapter summaries. The book can be used as a textbook and as a reference book by graduate students and academic and industrial researchers in the areas of soft computing, data mining, bioinformatics and geoscience.

Knowledge Discovery in Bioinformatics

Knowledge Discovery in Bioinformatics Book
Author : Xiaohua Hu,Yi Pan
Publisher : John Wiley & Sons
Release : 2007-06-11
ISBN : 9780470124635
Language : En, Es, Fr & De

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Book Description :

The purpose of this edited book is to bring together the ideas and findings of data mining researchers and bioinformaticians by discussing cutting-edge research topics such as, gene expressions, protein/RNA structure prediction, phylogenetics, sequence and structural motifs, genomics and proteomics, gene findings, drug design, RNAi and microRNA analysis, text mining in bioinformatics, modelling of biochemical pathways, biomedical ontologies, system biology and pathways, and biological database management.

Evolutionary Computation Machine Learning and Data Mining in Bioinformatics

Evolutionary Computation  Machine Learning and Data Mining in Bioinformatics Book
Author : Leonardo Vanneschi,William S. Bush,Mario Giacobini
Publisher : Springer
Release : 2013-03-19
ISBN : 9783642371882
Language : En, Es, Fr & De

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Book Description :

This book constitutes the refereed proceedings of the 11th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, EvoBIO 2013, held in Vienna, Austria, in April 2013, colocated with the Evo* 2013 events EuroGP, EvoCOP, EvoMUSART and EvoApplications. The 10 revised full papers presented together with 9 poster papers were carefully reviewed and selected from numerous submissions. The papers cover a wide range of topics in the field of biological data analysis and computational biology. They address important problems in biology, from the molecular and genomic dimension to the individual and population level, often drawing inspiration from biological systems in oder to produce solutions to biological problems.

Translational Bioinformatics Applications in Healthcare

Translational Bioinformatics Applications in Healthcare Book
Author : Khalid Raza,Nilanjan Dey
Publisher : CRC Press
Release : 2021-04-20
ISBN : 1000375161
Language : En, Es, Fr & De

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Book Description :

Translational bioinformatics (TBI) involves development of storage, analytics, and advanced computational methods to harvest knowledge from voluminous biomedical and genomic data into 4P healthcare (proactive, predictive, preventive, and participatory). Translational Bioinformatics Applications in Healthcare offers a detailed overview on concepts of TBI, biological and clinical databases, clinical informatics, and pertinent real-case applications. It further illustrates recent advancements, tools, techniques, and applications of TBI in healthcare, including Internet of Things (IoT) potential, toxin databases, medical image analysis and telemedicine applications, analytics of COVID-19 CT images, viroinformatics and viral diseases, and COVID-19–related research. Covers recent technologies such as Blockchain, IoT, and Big data analytics in bioinformatics Presents the role of translational bioinformatic methods in the field of viroinformatics, as well as in drug development and repurposing Includes translational healthcare and NGS for clinical applications Illustrates translational medicine systems and their applications in better healthcare Explores medical image analysis with focus on CT images and novel coronavirus disease detection Aimed at researchers and graduate students in computational biology, data mining and knowledge discovery, algorithms and complexity, and interdisciplinary fields of studies, including bioinformatics, health-informatics, biostatistics, biomedical engineering, and viroinformatics. Khalid Raza is an Assistant Professor, the Department of Computer Science, Jamia Millia Islamia (Central University), New Delhi. His research interests include translational bioinformatics, computational intelligence methods and its applications in bioinformatics, viroinformatics, and health informatics. Nilanjan Dey is an Associate Professor, the Department of Computer Science and Engineering, JIS University, Kolkata, India. His research interests include medical imaging, machine learning, computer-aided diagnosis, and data mining.

Scientific Data Mining and Knowledge Discovery

Scientific Data Mining and Knowledge Discovery Book
Author : Mohamed Medhat Gaber
Publisher : Springer Science & Business Media
Release : 2009-09-19
ISBN : 3642027881
Language : En, Es, Fr & De

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Book Description :

Mohamed Medhat Gaber “It is not my aim to surprise or shock you – but the simplest way I can summarise is to say that there are now in the world machines that think, that learn and that create. Moreover, their ability to do these things is going to increase rapidly until – in a visible future – the range of problems they can handle will be coextensive with the range to which the human mind has been applied” by Herbert A. Simon (1916-2001) 1Overview This book suits both graduate students and researchers with a focus on discovering knowledge from scienti c data. The use of computational power for data analysis and knowledge discovery in scienti c disciplines has found its roots with the re- lution of high-performance computing systems. Computational science in physics, chemistry, and biology represents the rst step towards automation of data analysis tasks. The rational behind the developmentof computationalscience in different - eas was automating mathematical operations performed in those areas. There was no attention paid to the scienti c discovery process. Automated Scienti c Disc- ery (ASD) [1–3] represents the second natural step. ASD attempted to automate the process of theory discovery supported by studies in philosophy of science and cognitive sciences. Although early research articles have shown great successes, the area has not evolved due to many reasons. The most important reason was the lack of interaction between scientists and the automating systems.

Biological Data Mining and Its Applications in Healthcare

Biological Data Mining and Its Applications in Healthcare Book
Author : Xiaoli Li,See-Kiong Ng,Jason T L Wang
Publisher : World Scientific
Release : 2013-11-28
ISBN : 9814551023
Language : En, Es, Fr & De

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Book Description :

Biologists are stepping up their efforts in understanding the biological processes that underlie disease pathways in the clinical contexts. This has resulted in a flood of biological and clinical data from genomic and protein sequences, DNA microarrays, protein interactions, biomedical images, to disease pathways and electronic health records. To exploit these data for discovering new knowledge that can be translated into clinical applications, there are fundamental data analysis difficulties that have to be overcome. Practical issues such as handling noisy and incomplete data, processing compute-intensive tasks, and integrating various data sources, are new challenges faced by biologists in the post-genome era. This book will cover the fundamentals of state-of-the-art data mining techniques which have been designed to handle such challenging data analysis problems, and demonstrate with real applications how biologists and clinical scientists can employ data mining to enable them to make meaningful observations and discoveries from a wide array of heterogeneous data from molecular biology to pharmaceutical and clinical domains. Contents:Sequence Analysis:Mining the Sequence Databases for Homology Detection: Application to Recognition of Functions of Trypanosoma brucei brucei Proteins and Drug Targets (G Ramakrishnan, V S Gowri, R Mudgal, N R Chandra and N Srinivasan)Identification of Genes and Their Regulatory Regions Based on Multiple Physical and Structural Properties of a DNA Sequence (Xi Yang, Nancy Yu Song and Hong Yan)Mining Genomic Sequence Data for Related Sequences Using Pairwise Statistical Significance (Yuhong Zhang and Yunbo Rao)Biological Network Mining:Indexing for Similarity Queries on Biological Networks (Günhan Gülsoy, Md Mahmudul Hasan, Yusuf Kavurucu and Tamer Kahveci)Theory and Method of Completion for a Boolean Regulatory Network Using Observed Data (Takeyuki Tamura and Tatsuya Akutsu)Mining Frequent Subgraph Patterns for Classifying Biological Data (Saeed Salem)On the Integration of Prior Knowledge in the Inference of Regulatory Networks (Catharina Olsen, Benjamin Haibe-Kains, John Quackenbush and Gianluca Bontempi)Classification, Trend Analysis and 3D Medical Images:Classification and Its Application to Drug-Target Prediction (Jian-Ping Mei, Chee-Keong Kwoh, Peng Yang and Xiao-Li Li)Characterization and Prediction of Human Protein-Protein Interactions (Yi Xiong, Dan Syzmanski and Daisuke Kihara)Trend Analysis (Wen-Chuan Xie, Miao He and Jake Yue Chen)Data Acquisition and Preprocessing on Three Dimensional Medical Images (Yuhua Jiao, Liang Chen and Jin Chen)Text Mining and Its Biomedical Applications:Text Mining in Biomedicine and Healthcare (Hong-Jie Dai, Chi-Yang Wu, Richard Tzong-Han Tsai and Wen-Lian Hsu)Learning to Rank Biomedical Documents with Only Positive and Unlabeled Examples: A Case Study (Mingzhu Zhu, Yi-Fang Brook Wu, Meghana Samir Vasavada and Jason T L Wang)Automated Mining of Disease-Specific Protein Interaction Networks Based on Biomedical Literature (Rajesh Chowdhary, Boris R Jankovic, Rachel V Stankowski, John A C Archer, Xiangliang Zhang, Xin Gao, Vladimir B Bajic) Readership: Students, professionals, those who perform biological, medical and bioinformatics research. Keywords:Healthcare;Data Mining;Biological Data Mining;Protein Interactions;Gene Regulation;Text Mining;Biological Literature Mining;Drug Discovery;Disease Network;Biological Network;Graph Mining;Sequence Analysis;Structure Analysis;Trend Analysis;Medical ImagesKey Features:Each chapter of this book will include a section to introduce a specific class of data mining techniques, which will be written in a tutorial style so that even non-computational readers such as biologists and healthcare researchers can appreciate themThe book will disseminate the impact research results and best practices of data mining approaches to the cross-disciplinary researchers and practitioners from both the data mining disciplines and the life sciences domains. The authors of the book will be well-known data mining experts, bioinformaticians and cliniciansEach chapter will also provide a detailed description on how to apply the data mining techniques in real-world biological and clinical applications. Thus, readers of this book can easily appreciate the computational techniques and how they can be used to address their own research issues

Data Mining

Data Mining Book
Author : Sushmita Mitra,Tinku Acharya
Publisher : John Wiley & Sons
Release : 2005-01-21
ISBN : 9780471474883
Language : En, Es, Fr & De

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Book Description :

First title to ever present soft computing approaches and their application in data mining, along with the traditional hard-computing approaches Addresses the principles of multimedia data compression techniques (for image, video, text) and their role in data mining Discusses principles and classical algorithms on string matching and their role in data mining

Practical Applications of Computational Biology and Bioinformatics 13th International Conference

Practical Applications of Computational Biology and Bioinformatics  13th International Conference Book
Author : Florentino Fdez-Riverola,Miguel Rocha,Mohd Saberi Mohamad,Nazar Zaki,José A. Castellanos-Garzón
Publisher : Springer
Release : 2019-08-20
ISBN : 3030238733
Language : En, Es, Fr & De

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Book Description :

This book features 21 papers spanning many different sub-fields in bioinformatics and computational biology, presenting the latest research on the practical applications to promote fruitful interactions between young researchers in different areas related to the field. Next-generation sequencing technologies, together with other emerging and diverse experimental techniques, are evolving rapidly, creating numerous types of omics data. These, in turn, are creating new challenges for the expanding fields of bioinformatics and computational biology, which seek to analyse, process, integrate and extract meaningful knowledge from such data. This calls for new algorithms and approaches from fields such as databases, statistics, data mining, machine learning, optimization, computer science, machine learning and artificial intelligence. Clearly, biology is increasingly becoming a science of information, requiring tools from the computational sciences. To address these challenges, we have seen the emergence of a new generation of interdisciplinary scientists with a strong background in the biological and computational sciences. In this context, the interaction of researchers from different scientific areas is, more than ever, vital to boost the research efforts in the field and contribute to the training of the new generation of interdisciplinary scientists.

5th International Symposium on Data Mining Applications

5th International Symposium on Data Mining Applications Book
Author : Mamdouh Alenezi,Basit Qureshi
Publisher : Springer
Release : 2018-03-28
ISBN : 3319787535
Language : En, Es, Fr & De

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Book Description :

The 5th Symposium on Data Mining Applications (SDMA 2018) provides valuable opportunities for technical collaboration among data mining and machine learning researchers in Saudi Arabia, Gulf Cooperation Council (GCC) countries and the Middle East region. This book gathers the proceedings of the SDMA 2018. All papers were peer-reviewed based on a strict policy concerning the originality, significance to the area, scientific vigor and quality of the contribution, and address the following research areas.• Applications: Applications of data mining in domains including databases, social networks, web, bioinformatics, finance, healthcare, and security.• Algorithms: Data mining and machine learning foundations, algorithms, models, and theory.• Text Mining: Semantic analysis and mining text in Arabic, semi-structured, streaming, multimedia data.• Framework: Data mining frameworks, platforms and systems implementation.• Visualizations: Data visualization and modeling.

Data Mining

Data Mining Book
Author : Robert Stahlbock,Sven F. Crone,Stefan Lessmann
Publisher : Springer Science & Business Media
Release : 2009-11-10
ISBN : 9781441912800
Language : En, Es, Fr & De

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Book Description :

Over the course of the last twenty years, research in data mining has seen a substantial increase in interest, attracting original contributions from various disciplines including computer science, statistics, operations research, and information systems. Data mining supports a wide range of applications, from medical decision making, bioinformatics, web-usage mining, and text and image recognition to prominent business applications in corporate planning, direct marketing, and credit scoring. Research in information systems equally reflects this inter- and multidisciplinary approach, thereby advocating a series of papers at the intersection of data mining and information systems research. This special issue of Annals of Information Systems contains original papers and substantial extensions of selected papers from the 2007 and 2008 International Conference on Data Mining (DMIN’07 and DMIN’08, Las Vegas, NV) that have been rigorously peer-reviewed. The issue brings together topics on both information systems and data mining, and aims to give the reader a current snapshot of the contemporary research and state of the art practice in data mining.

Data Mining in Bioinformatics

Data Mining in Bioinformatics Book
Author : Jason T. L. Wang,Mohammed J. Zaki,Hannu Toivonen,Dennis Shasha
Publisher : Springer Science & Business Media
Release : 2006-03-30
ISBN : 1846280591
Language : En, Es, Fr & De

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Book Description :

Written especially for computer scientists, all necessary biology is explained. Presents new techniques on gene expression data mining, gene mapping for disease detection, and phylogenetic knowledge discovery.

Translational Bioinformatics in Healthcare and Medicine

Translational Bioinformatics in Healthcare and Medicine Book
Author : Anonim
Publisher : Academic Press
Release : 2021-05-13
ISBN : 0323898904
Language : En, Es, Fr & De

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Book Description :

Translational Bioinformatics in Healthcare and Medicine offers an overview of main principles of bioinformatics, biological databases, clinical informatics, health informatics, viroinformatics and real-case applications of translational bioinformatics in healthcare. Written by experts from both technology and clinical sides, the content brings together essential knowledge to make the best of recent advancements of the field. The book discusses topics such as next generation sequence analysis, genomics in clinical care, IoT applications, blockchain technology, patient centered interoperability of EHR, health data mining, and translational bioinformatics methods for drug discovery and drug repurposing. In addition, it discusses the role of bioinformatics in cancer research and viroinformatics approaches to counter viral diseases through informatics. This is a valuable resource for bioinformaticians, clinicians, healthcare professionals, graduate students and several members of biomedical field who are interested in learning more about how bioinformatics can impact in their research and practice. Covers recent advancements in translational bioinformatics and its healthcare applications Discusses integrative and multidisciplinary approaches to U-healthcare systems development and management Bridges the gap among various knowledge domains in the field, integrating both technological and clinical knowledge into practical content

Advanced Data Mining Technologies in Bioinformatics

Advanced Data Mining Technologies in Bioinformatics Book
Author : Hui-Huang Hsu
Publisher : IGI Global
Release : 2006-01-01
ISBN : 1591408636
Language : En, Es, Fr & De

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Book Description :

"This book covers research topics of data mining on bioinformatics presenting the basics and problems of bioinformatics and applications of data mining technologies pertaining to the field"--Provided by publisher.

Data Mining and Bioinformatics

Data Mining and Bioinformatics Book
Author : Mehmet M Dalkilic
Publisher : Springer Science & Business Media
Release : 2006-12-21
ISBN : 3540689702
Language : En, Es, Fr & De

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Book Description :

This book constitutes the thoroughly refereed post-proceedings of the First VLDB 2006 International Workshop on Data Mining and Bioinformatics, VDMB 2006, held in Seoul, Korea in September 2006 in conjunction with VLDB 2006. The 15 revised full papers presented together with an invited talk were carefully reviewed and selected from 30 submissions. The papers cover various topics in the areas of microarray data analysis, bioinformatics system and text retrieval, application of gene expression data, and sequence analysis.