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Biomedical Image Analysis Recipes In Matlab

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Biomedical Image Analysis Recipes in MATLAB

Biomedical Image Analysis Recipes in MATLAB Book
Author : Constantino Carlos Reyes-Aldasoro
Publisher : John Wiley & Sons
Release : 2015-04-06
ISBN : 1118657462
Language : En, Es, Fr & De

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Book Description :

As its title suggests, this innovative book has been written for life scientists needing to analyse their data sets, and programmers, wanting a better understanding of the types of experimental images life scientists investigate on a regular basis. Each chapter presents one self-contained biomedical experiment to be analysed. Part I of the book presents its two basic ingredients: essential concepts of image analysis and Matlab. In Part II, algorithms and techniques are shown as series of "recipes" or solved examples that show how specific techniques are applied to a biomedical experiments like Western Blots, Histology, Scratch Wound Assays and Fluoresence. Each recipe begins with simple techniques that gradually advance in complexity. Part III presents some advanced techniques for the generation of publication quality figures. The book does not assume any computational or mathematical expertise. A practical, clearly-written introduction to biomedical image analysis that provides the tools for life scientists and engineers to use when solving problems in their own laboratories. Presents the basic concepts of MATLAB software and uses it throughout to show how it can execute flexible and powerful image analysis programs tailored to the specific needs of the problem. Within the context of four biomedical cases, it shows algorithms and techniques as series of "recipes", or solved examples that show how a particular technique is applied in a specific experiment. Companion website containing example datasets, MATLAB files and figures from the book.

Biomedical Image Analysis Recipes in MATLAB

Biomedical Image Analysis Recipes in MATLAB Book
Author : Constantino Carlos Reyes-Aldasoro,Abhir Bhalerao
Publisher : John Wiley & Sons
Release : 2015-06-22
ISBN : 1118657551
Language : En, Es, Fr & De

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Book Description :

As its title suggests, this innovative book has been written for life scientists needing to analyse their data sets, and programmers, wanting a better understanding of the types of experimental images life scientists investigate on a regular basis. Each chapter presents one self-contained biomedical experiment to be analysed. Part I of the book presents its two basic ingredients: essential concepts of image analysis and Matlab. In Part II, algorithms and techniques are shown as series of 'recipes' or solved examples that show how specific techniques are applied to a biomedical experiments like Western Blots, Histology, Scratch Wound Assays and Fluoresence. Each recipe begins with simple techniques that gradually advance in complexity. Part III presents some advanced techniques for the generation of publication quality figures. The book does not assume any computational or mathematical expertise. A practical, clearly-written introduction to biomedical image analysis that provides the tools for life scientists and engineers to use when solving problems in their own laboratories. Presents the basic concepts of MATLAB® software and uses it throughout to show how it can execute flexible and powerful image analysis programs tailored to the specific needs of the problem. Within the context of four biomedical cases, it shows algorithms and techniques as series of 'recipes', or solved examples that show how a particular technique is applied in a specific experiment. Companion website containing example datasets, MATLAB® files and figures from the book.

Guide to Medical Image Analysis

Guide to Medical Image Analysis Book
Author : Klaus D. Toennies
Publisher : Springer
Release : 2017-03-29
ISBN : 1447173201
Language : En, Es, Fr & De

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Book Description :

This comprehensive guide provides a uniquely practical, application-focused introduction to medical image analysis. This fully updated new edition has been enhanced with material on the latest developments in the field, whilst retaining the original focus on segmentation, classification and registration. Topics and features: presents learning objectives, exercises and concluding remarks in each chapter; describes a range of common imaging techniques, reconstruction techniques and image artifacts, and discusses the archival and transfer of images; reviews an expanded selection of techniques for image enhancement, feature detection, feature generation, segmentation, registration, and validation; examines analysis methods in view of image-based guidance in the operating room (NEW); discusses the use of deep convolutional networks for segmentation and labeling tasks (NEW); includes appendices on Markov random field optimization, variational calculus and principal component analysis.

Applications of Image Processing and Soft Computing Systems in Agriculture

Applications of Image Processing and Soft Computing Systems in Agriculture Book
Author : Razmjooy, Navid,Estrela, Vania Vieira
Publisher : IGI Global
Release : 2019-02-22
ISBN : 152258028X
Language : En, Es, Fr & De

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Book Description :

The variety and abundance of qualitative characteristics of agricultural products have been the main reasons for the development of different types of non-destructive methods (NDTs). Quality control of these products is one of the most important tasks in manufacturing processes. The use of control and automation has become more widespread, and new approaches provide opportunities for production competition through new technologies. Applications of Image Processing and Soft Computing Systems in Agriculture examines applications of artificial intelligence in agriculture and the main uses of shape analysis on agricultural products such as relationships between form and genetics, adaptation, product characteristics, and product sorting. Additionally, it provides insights developed through computer vision techniques. Highlighting such topics as deep learning, agribusiness, and augmented reality, it is designed for academicians, researchers, agricultural practitioners, and industry professionals.

Fluorescence Microscopy

Fluorescence Microscopy Book
Author : Ulrich Kubitscheck
Publisher : John Wiley & Sons
Release : 2017-05-08
ISBN : 3527338373
Language : En, Es, Fr & De

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Book Description :

While there are many publications on the topic written by experts for experts, this text is specifically designed to allow advanced students and researchers with no background in physics to comprehend novel fluorescence microscopy techniques. This second edition features new chapters and a subsequent focus on super-resolution and single-molecule microscopy as well as an expanded introduction. Each chapter is written by a renowned expert in the field, and has been thoroughly revised to reflect the developments in recent years.

Introduction to Spatial Mapping of Biomolecules by Imaging Mass Spectrometry

Introduction to Spatial Mapping of Biomolecules by Imaging Mass Spectrometry Book
Author : Bindesh Shrestha
Publisher : Elsevier
Release : 2021-05-07
ISBN : 0128189991
Language : En, Es, Fr & De

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Book Description :

Imaging mass spectrometry (MS) techniques are often utilized without an understanding of their underlying principles, making it difficult for scientists to determine when and how they can exploit MS to visualize their biomolecules of interest. Introduction to Spatial Mapping of Biomolecules by Imaging Mass Spectrometry is an essential reference to help scientists determine the status and strategies of biomolecule analysis, describing its many applications for diverse classes of biomolecules. The book builds a foundation of imaging MS knowledge by introducing ionization sources, sample preparation, visualization guidelines, molecule identification, quantification, data analysis, etc. The second section contains chapters focused on case studies on analyzing a biomolecule class of molecules. Case studies include an introduction/background, and a summary of successful imaging MS studies with illustrative figures and future directions. Provides the introductory foundations of imaging mass spectrometry for those new to the technique Organized by topic to facilitate a quick deep dive, allowing researchers to immediately apply the imaging MS techniques to their work Includes case studies summarizing the imaging MS techniques developed for the class of molecules

Deformation Characteristics of Geomaterials

Deformation Characteristics of Geomaterials Book
Author : V.A. Rinaldi,M.E. Zeballos,J.J. Clariá
Publisher : IOS Press
Release : 2015-12-11
ISBN : 1614996016
Language : En, Es, Fr & De

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Book Description :

In November 2015, Buenos Aires, Argentina became the location of several important events for geo-professionals, with the simultaneous holding of the 6th International Symposium on Deformation Characteristics of Geomaterials, the 15th Pan-American Conference on Soil Mechanics and Geotechnical Engineering (XV PCSMGE), the 8th South American Congress on Rock Mechanics (SCRM), as well as the 22nd Argentinean Congress of Geotechnical Engineering (CAMSIGXXII). This synergy provided a unique opportunity to exchange ideas and discuss current and future practices in the areas of soil mechanics and rock mechanics, and their applications in civil, energy, environmental, and mining engineering. This book presents the proceedings of the 6th International Symposium on Deformation Characteristics of Geomaterials. As well as 118 articles selected for publication after peer review, it includes 7 lectures delivered by invited keynote speakers and the Third Bishop Lecture, delivered by Professor Herve Di Benedetto of the University of Lyon, France, who presented a reference work on the advanced testing and modeling of bituminous bounded and unbounded granular materials. The conference brought together practitioners, researchers and educators from around the world engaged in the understanding of the deformation properties of geo-materials before failure, and the small strain parameters as fundamental characteristics of geo-materials. The main topics covered by the symposium include experimental investigations from very small strains to beyond failure, including multi-physical approach; HTC M coupling behavior, characterization and modeling of various geo-materials and interfaces; and practical prediction and interpretation of ground responses: field observation and case histories.

Digital Image Processing and Analysis

Digital Image Processing and Analysis Book
Author : Scott E Umbaugh
Publisher : CRC Press
Release : 2017-11-30
ISBN : 1498766072
Language : En, Es, Fr & De

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Book Description :

Digital image processing and analysis is a field that continues to experience rapid growth, with applications in many facets of our lives. Areas such as medicine, agriculture, manufacturing, transportation, communication systems, and space exploration are just a few of the application areas. This book takes an engineering approach to image processing and analysis, including more examples and images throughout the text than the previous edition. It provides more material for illustrating the concepts, along with new PowerPoint slides. The application development has been expanded and updated, and the related chapter provides step-by-step tutorial examples for this type of development. The new edition also includes supplementary exercises, as well as MATLAB-based exercises, to aid both the reader and student in development of their skills.

Biomedical Image Analysis

Biomedical Image Analysis Book
Author : Aly A. Farag
Publisher : Cambridge University Press
Release : 2014-10-30
ISBN : 0521196795
Language : En, Es, Fr & De

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Book Description :

Ideal for classroom use and self-study, this book explains the implementation of the most effective modern methods in image analysis, covering segmentation, registration and visualisation, and focusing on the key theories, algorithms and applications that have emerged from recent progress in computer vision, imaging and computational biomedical science. Structured around five core building blocks - signals, systems, image formation and modality; stochastic models; computational geometry; level set methods; and tools and CAD models - it provides a solid overview of the field. Mathematical and statistical topics are presented in a straightforward manner, enabling the reader to gain a deep understanding of the subject without becoming entangled in mathematical complexities. Theory is connected to practical examples in x-ray, ultrasound, nuclear medicine, MRI and CT imaging, removing the abstract nature of the models and assisting reader understanding, whilst computer simulations, online course slides and a solution manual provide a complete instructor package.

Acceleration of Biomedical Image Processing with Dataflow on FPGAs

Acceleration of Biomedical Image Processing with Dataflow on FPGAs Book
Author : Frederik Grüll, Udo Kebschull
Publisher : River Publishers
Release : 2016-06-30
ISBN : 8793379366
Language : En, Es, Fr & De

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Book Description :

Short compute times are crucial for timely diagnostics in biomedical applications, but lead to a high demand in computing for new and improved imaging techniques. In this book reconfigurable computing with FPGAs is discussed as an alternative to multi-core processing and graphics card accelerators. Instead of adjusting the application to the hardware, FPGAs allow the hardware to also be adjusted to the problem. Acceleration of Biomedical Image Processing with Dataflow on FPGAs covers the transformation of image processing algorithms towards a system of deep pipelines that can be executed with very high parallelism. The transformation process is discussed from initial design decisions to working implementations. Two example applications from stochastic localization microscopy and electron tomography illustrate the approach further. Topics discussed in the book include: Reconfigurable hardwareDataflow computingImage processingApplication acceleration

MATLAB and Design Recipes for Earth Sciences

MATLAB   and Design Recipes for Earth Sciences Book
Author : Martin H. Trauth,Elisabeth Sillmann
Publisher : Springer Science & Business Media
Release : 2012-09-14
ISBN : 3642325432
Language : En, Es, Fr & De

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Book Description :

The overall aim of the book is to introduce students to the typical course followed by a data analysis project in earth sciences. A project usually involves searching relevant literature, reviewing and ranking published books and journal articles, extracting relevant information from the literature in the form of text, data, or graphs, searching and processing the relevant original data using MATLAB, and compiling and presenting the results as posters, abstracts, and oral presentations using graphics design software. The text of this book includes numerous examples on the use of internet resources, on the visualization of data with MATLAB, and on preparing scientific presentations. As with its sister book MATLAB Recipes for Earth Sciences–3rd Edition (2010), which demonstrates the use of statistical and numerical methods on earth science data, this book uses state-of-the art software packages, including MATLAB and the Adobe Creative Suite, to process and present geoscientific information collected during the course of an earth science project. The book's supplementary electronic material (available online through the publisher's website) includes color versions of all figures, recipes with all the MATLAB commands featured in the book, the example data, exported MATLAB graphics, and screenshots of the most important steps involved in processing the graphics.

Image Processing with MATLAB

Image Processing with MATLAB Book
Author : Omer Demirkaya,Musa H. Asyali,Prasanna K. Sahoo
Publisher : CRC Press
Release : 2008-12-22
ISBN : 1420008935
Language : En, Es, Fr & De

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Book Description :

Image Processing with MATLAB: Applications in Medicine and Biology explains complex, theory-laden topics in image processing through examples and MATLAB algorithms. It describes classical as well emerging areas in image processing and analysis. Providing many unique MATLAB codes and functions throughout, the book covers the theory of probability an

Introduction to Subsurface Imaging

Introduction to Subsurface Imaging Book
Author : Bahaa Saleh
Publisher : Cambridge University Press
Release : 2011-03-17
ISBN : 1139495348
Language : En, Es, Fr & De

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Book Description :

Describing and evaluating the basic principles and methods of subsurface sensing and imaging, Introduction to Subsurface Imaging is a clear and comprehensive treatment that links theory to a wide range of real-world applications in medicine, biology, security and geophysical/environmental exploration. It integrates the different sensing techniques (acoustic, electric, electromagnetic, optical, x-ray or particle beams) by unifying the underlying physical and mathematical similarities, and computational and algorithmic methods. Time-domain, spectral and multisensor methods are also covered, whilst all the necessary mathematical, statistical and linear systems tools are given in useful appendices to make the book self-contained. Featuring a logical blend of theory and applications, a wealth of color illustrations, homework problems and numerous case studies, this is suitable for use as both a course text and as a professional reference.

Collecting Processing and Presenting Geoscientific Information

Collecting  Processing and Presenting Geoscientific Information Book
Author : Martin H. Trauth,Elisabeth Sillmann
Publisher : Springer
Release : 2018-03-26
ISBN : 3662562030
Language : En, Es, Fr & De

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Book Description :

This second edition is an intensively revised and updated version of the book MATLAB® and Design Recipes for Earth Sciences. It aims to introduce students to the typical course followed by a data analysis project in earth sciences. A project usually involves searching relevant literature, reviewing and ranking published books and journal articles, extracting relevant information from the literature in the form of text, data, or graphs, searching and processing the relevant original data using MATLAB, and compiling and presenting the results as posters, abstracts, and oral presentations using graphics design software. The text of this book includes numerous examples on the use of internet resources, on the visualization of data with MATLAB, and on preparing scientific presentations. As with the book MATLAB Recipes for Earth Sciences–4rd Edition (2015), which demonstrates the use of statistical and numerical methods on earth science data, this book uses state-of-the art software packages, including MATLAB and the Adobe Creative Suite, to process and present geoscientific information collected during the course of an earth science project. The book's supplementary electronic material (available online through the publisher's website) includes color versions of all figures, recipes with all the MATLAB commands featured in the book, the example data, exported MATLAB graphics, and screenshots of the most important steps involved in processing the graphics.

Wavelets in Chemistry

Wavelets in Chemistry Book
Author : Beata Walczak
Publisher : Elsevier
Release : 2000-05-10
ISBN : 9780080543741
Language : En, Es, Fr & De

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Book Description :

Wavelets seem to be the most efficient tool in signal denoising and compression. They can be used in an unlimited number of applications in all fields of chemistry where the instrumental signals are the source of information about the studied chemical systems or phenomena, and in all cases where these signals have to be archived. The quality of the instrumental signals determines the quality of answer to the basic analytical questions: how many components are in the studied systems, what are these components like and what are their concentrations? Efficient compression of the signal sets can drastically speed up further processing such as data visualization, modelling (calibration and pattern recognition) and library search. Exploration of the possible applications of wavelets in analytical chemistry has just started and this book will significantly speed up the process. The first part, concentrating on theoretical aspects, is written in a tutorial-like manner, with simple numerical examples. For the reader's convenience, all basic terms are explained in detail and all unique properties of wavelets are pinpointed and compared with the other types of basis function. The second part presents applications of wavelets from many branches of chemistry which will stimulate chemists to further exploration of this exciting subject.

Digital Holography and Digital Image Processing

Digital Holography and Digital Image Processing Book
Author : Leonid Yaroslavsky
Publisher : Springer Science & Business Media
Release : 2013-03-14
ISBN : 1475749880
Language : En, Es, Fr & De

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Book Description :

Digital holography and digital image processing are twins born by computer era. They share origin, theoretical base, methods and algorithms. The present book describes these common fundamentals principles, methods and algorithms including image and hologram digitization, data compression, digital transforms and efficient computational algorithms, statistical and Monte-Carlo methods, image restoration and enhancement, image reconstruction in tomography and digital holography, discrete signal resampling and image geometrical transformations, accurate measurements and reliable target localization in images, recording and reconstruction of computer generated holograms, adaptive and nonlinear filters for sensor signal perfecting and image restoration and enhancement. The book combines theory, heavily illustrated practical methods and efficient computational algorithms and is written for senior-level undergraduate and graduate students, researchers and engineers in optics, photonics, opto-electronics and electronic engineering.

Computer aided Detection of Architectural Distortion in Prior Mammograms of Interval Cancer

Computer aided Detection of Architectural Distortion in Prior Mammograms of Interval Cancer Book
Author : Shantanu Banik,Rangaraj Rangayyan,J.E. Leo Desautels
Publisher : Morgan & Claypool Publishers
Release : 2013-01-01
ISBN : 1627050833
Language : En, Es, Fr & De

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Book Description :

Architectural distortion is an important and early sign of breast cancer, but because of its subtlety, it is a common cause of false-negative findings on screening mammograms. Screening mammograms obtained prior to the detection of cancer could contain subtle signs of early stages of breast cancer, in particular, architectural distortion. This book presents image processing and pattern recognition techniques to detect architectural distortion in prior mammograms of interval-cancer cases. The methods are based upon Gabor filters, phase portrait analysis, procedures for the analysis of the angular spread of power, fractal analysis, Laws' texture energy measures derived from geometrically transformed regions of interest (ROIs), and Haralick's texture features. With Gabor filters and phase-portrait analysis, 4,224 ROIs were automatically obtained from 106 prior mammograms of 56 interval-cancer cases, including 301 true-positive ROIs related to architectural distortion, and from 52 mammograms of 13 normal cases. For each ROI, the fractal dimension, the entropy of the angular spread of power, 10 Laws' texture energy measures, and Haralick's 14 texture features were computed. The areas under the receiver operating characteristic (ROC) curves obtained using the features selected by stepwise logistic regression and the leave-one-image-out method are 0.77 with the Bayesian classifier, 0.76 with Fisher linear discriminant analysis, and 0.79 with a neural network classifier. Free-response ROC analysis indicated sensitivities of 0.80 and 0.90 at 5.7 and 8.8 false positives (FPs) per image, respectively, with the Bayesian classifier and the leave-one-image-out method. The present study has demonstrated the ability to detect early signs of breast cancer 15 months ahead of the time of clinical diagnosis, on the average, for interval-cancer cases, with a sensitivity of 0.8 at 5.7 FP/image. The presented computer-aided detection techniques, dedicated to accurate detection and localization of architectural distortion, could lead to efficient detection of early and subtle signs of breast cancer at pre-mass-formation stages. Table of Contents: Introduction / Detection of Early Signs of Breast Cancer / Detection and Analysis of Oriented Patterns / Detection of Potential Sites of Architectural Distortion / Experimental Set Up and Datasets / Feature Selection and Pattern Classification / Analysis of Oriented Patterns Related to Architectural Distortion / Detection of Architectural Distortion in Prior Mammograms / Concluding Remarks

Biomedical Fluid Dynamics

Biomedical Fluid Dynamics Book
Author : Troy Shinbrot
Publisher : Oxford University Press, USA
Release : 2019-03-07
ISBN : 0198812582
Language : En, Es, Fr & De

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Book Description :

This is a readable and attractively presented textbook on fluid flow in biological systems that includes flow through blood vessels, pulsatile flow, and pattern formation. It bridges the divide among biomedical engineering students between those with an engineering and those with a bio-scientific background, by offering guidance in both physiological and mathematical aspects of the subject. Every chapter includes surprising, amusing, and stimulating effects that the reader may want to experiment on their own. Brief historical vignettes are also included throughout this book. We in the 21st century can so easily turn to the computer to provide a solution, that we forget the extraordinary sparks of insight that scientists in centuries past had to rely on to provide us with the foundational understanding and analytical tools that we now depend on. This book is an attempt to maintain our roots in past investigations, while giving us wings to explore future ones.

Data Sources

Data Sources Book
Author : Anonim
Publisher : Unknown
Release : 2000
ISBN : 0987650XXX
Language : En, Es, Fr & De

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Book Description :

Download Data Sources book written by , available in PDF, EPUB, and Kindle, or read full book online anywhere and anytime. Compatible with any devices.