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Bioinformatics Algorithms

Bioinformatics Algorithms Book
Author : Ion Mandoiu,Alexander Zelikovsky
Publisher : John Wiley & Sons
Release : 2008-02-25
ISBN : 0470097736
Language : En, Es, Fr & De

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Book Description :

Presents algorithmic techniques for solving problems in bioinformatics, including applications that shed new light on molecular biology This book introduces algorithmic techniques in bioinformatics, emphasizing their application to solving novel problems in post-genomic molecular biology. Beginning with a thought-provoking discussion on the role of algorithms in twenty-first-century bioinformatics education, Bioinformatics Algorithms covers: General algorithmic techniques, including dynamic programming, graph-theoretical methods, hidden Markov models, the fast Fourier transform, seeding, and approximation algorithms Algorithms and tools for genome and sequence analysis, including formal and approximate models for gene clusters, advanced algorithms for non-overlapping local alignments and genome tilings, multiplex PCR primer set selection, and sequence/network motif finding Microarray design and analysis, including algorithms for microarray physical design, missing value imputation, and meta-analysis of gene expression data Algorithmic issues arising in the analysis of genetic variation across human population, including computational inference of haplotypes from genotype data and disease association search in case/control epidemiologic studies Algorithmic approaches in structural and systems biology, including topological and structural classification in biochemistry, and prediction of protein-protein and domain-domain interactions Each chapter begins with a self-contained introduction to a computational problem; continues with a brief review of the existing literature on the subject and an in-depth description of recent algorithmic and methodological developments; and concludes with a brief experimental study and a discussion of open research challenges. This clear and approachable presentation makes the book appropriate for researchers, practitioners, and graduate students alike.

Bioinformatics Algorithms

Bioinformatics Algorithms Book
Author : Phillip Compeau,Pavel Pevzner
Publisher : Unknown
Release : 1986-06
ISBN : 9780990374633
Language : En, Es, Fr & De

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Book Description :

Bioinformatics Algorithms: an Active Learning Approach is one of the first textbooks to emerge from the recent Massive Online Open Course (MOOC) revolution. A light-hearted and analogy-filled companion to the authors' acclaimed online course (http://coursera.org/course/bioinformatics), this book presents students with a dynamic approach to learning bioinformatics. It strikes a unique balance between practical challenges in modern biology and fundamental algorithmic ideas, thus capturing the interest of students of biology and computer science students alike.Each chapter begins with a central biological question, such as "Are There Fragile Regions in the Human Genome?" or "Which DNA Patterns Play the Role of Molecular Clocks?" and then steadily develops the algorithmic sophistication required to answer this question. Hundreds of exercises are incorporated directly into the text as soon as they are needed; readers can test their knowledge through automated coding challenges on Rosalind (http://rosalind.info), an online platform for learning bioinformatics.The textbook website (http://bioinformaticsalgorithms.org) directs readers toward additional educational materials, including video lectures and PowerPoint slides.

Bioinformatics Algorithms

Bioinformatics Algorithms Book
Author : Miguel Rocha,Pedro G. Ferreira
Publisher : Academic Press
Release : 2018-06-08
ISBN : 0128125217
Language : En, Es, Fr & De

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Book Description :

Bioinformatics Algorithms: Design and Implementation in Python provides a comprehensive book on many of the most important bioinformatics problems, putting forward the best algorithms and showing how to implement them. The book focuses on the use of the Python programming language and its algorithms, which is quickly becoming the most popular language in the bioinformatics field. Readers will find the tools they need to improve their knowledge and skills with regard to algorithm development and implementation, and will also uncover prototypes of bioinformatics applications that demonstrate the main principles underlying real world applications. Presents an ideal text for bioinformatics students with little to no knowledge of computer programming Based on over 12 years of pedagogical materials used by the authors in their own classrooms Features a companion website with downloadable codes and runnable examples (such as using Jupyter Notebooks) and exercises relating to the book

An Introduction to Bioinformatics Algorithms

An Introduction to Bioinformatics Algorithms Book
Author : Neil C. Jones,Pavel A. Pevzner,Pavel Pevzner
Publisher : MIT Press
Release : 2004
ISBN : 9780262101066
Language : En, Es, Fr & De

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Book Description :

Algorithms and Complexity. Molecular Biology Primer. Exhaustive Search. Greedy Algorithms. Dynamic Programming Algorithms. Divide-and-Conquer Algorithms. Graph Algorithms. Combinatorial Pattern Matching. Clustering and Trees. Hidden Markov Models. Randomized Algorithms.

Molecular Bioinformatics

Molecular Bioinformatics Book
Author : Steffen Schulze-Kremer
Publisher : Walter de Gruyter
Release : 1996-01-01
ISBN : 3110808919
Language : En, Es, Fr & De

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Book Description :

Download Molecular Bioinformatics book written by Steffen Schulze-Kremer, available in PDF, EPUB, and Kindle, or read full book online anywhere and anytime. Compatible with any devices.

Bioinformatics Algorithms

Bioinformatics Algorithms Book
Author : Enno Ohlebusch
Publisher : Unknown
Release : 2013
ISBN : 9783000413162
Language : En, Es, Fr & De

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Book Description :

Download Bioinformatics Algorithms book written by Enno Ohlebusch, available in PDF, EPUB, and Kindle, or read full book online anywhere and anytime. Compatible with any devices.

BIOINFORMATICS ALGORITHMS An Introduction

BIOINFORMATICS ALGORITHMS  An Introduction  Book
Author : Na Vikraman
Publisher : Independently Published
Release : 2020-07-21
ISBN : 0987650XXX
Language : En, Es, Fr & De

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Book Description :

This book has been written for the Medical/Pharmacy/Nursing/ME/M.TECH/BE/B.Tech students of All University with latest syllabus for ECE, EEE, CSE, IT, Mechanical, Bio Medical, Bio Tech, BCA, MCA and All B.Sc Department Students. The basic aim of this book is to provide a basic knowledge in BioInformatics Algorithms.BioInformatics Algorithms Syllabus students of degree, diploma & AMIE courses and a useful reference for these preparing for competitive examinations. All the concepts are explained in a simple, clear and complete manner to achieve progressive learning.This book is divided into five chapters. Each chapter is well supported with the necessary illustration practical examples.

Algorithms in Bioinformatics

Algorithms in Bioinformatics Book
Author : Wing-Kin Sung
Publisher : CRC Press
Release : 2009-11-24
ISBN : 1420070347
Language : En, Es, Fr & De

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Book Description :

Thoroughly Describes Biological Applications, Computational Problems, and Various Algorithmic Solutions Developed from the author's own teaching material, Algorithms in Bioinformatics: A Practical Introduction provides an in-depth introduction to the algorithmic techniques applied in bioinformatics. For each topic, the author clearly details the bi

Polarity Index in Proteins A Bioinformatics Tool

Polarity Index in Proteins   A Bioinformatics Tool Book
Author : Carlos Polanco
Publisher : Bentham Science Publishers
Release : 2016-06-29
ISBN : 1681082691
Language : En, Es, Fr & De

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Book Description :

Polarity is a physico-chemical property that characterizes the electromagnetic stability of a protein and can be used to predict its plausible pathogenic action. For this reason, polarity is regarded as a major factor in most mathematical-computational algorithms that seek to characterize peptides and proteins. The Polarity Index Method makes it possible to reproduce the main classification of peptide proteins found in different databases, with a high degree of discriminative efficiency. Polarity Index In Proteins is a brief monograph that explains the foundations of the polarity index method and presents examples of the application of this method for identifying the structural and functional relationships of different types of proteins (including cell penetrating peptides and natively unfolded proteins). The monograph is divided into sections that cover basic protein biochemistry, the computational mathematical foundations of the polarity index method, the application of the method on different protein structures, and the evaluation of the results of famous experiments on biogenesis (Miller & Urey, Fox & Harada, Rode) by the same method. Polarity Index In Proteins serves as an essential handbook for students and researchers in the field of bioinformatics, proteomics as well as for studies on the role of proteins in the origin of life.

Beginning Perl for Bioinformatics

Beginning Perl for Bioinformatics Book
Author : James Tisdall
Publisher : "O'Reilly Media, Inc."
Release : 2001-10-22
ISBN : 9780596550479
Language : En, Es, Fr & De

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Book Description :

With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challenge. Many biologists have a difficult time learning how to apply the language to bioinformatics. The most popular Perl programming books are often too theoretical and too focused on computer science for a non-programming biologist who needs to solve very specific problems.Beginning Perl for Bioinformatics is designed to get you quickly over the Perl language barrier by approaching programming as an important new laboratory skill, revealing Perl programs and techniques that are immediately useful in the lab. Each chapter focuses on solving a particular bioinformatics problem or class of problems, starting with the simplest and increasing in complexity as the book progresses. Each chapter includes programming exercises and teaches bioinformatics by showing and modifying programs that deal with various kinds of practical biological problems. By the end of the book you'll have a solid understanding of Perl basics, a collection of programs for such tasks as parsing BLAST and GenBank, and the skills to take on more advanced bioinformatics programming. Some of the later chapters focus in greater detail on specific bioinformatics topics. This book is suitable for use as a classroom textbook, for self-study, and as a reference.The book covers: Programming basics and working with DNA sequences and strings Debugging your code Simulating gene mutations using random number generators Regular expressions and finding motifs in data Arrays, hashes, and relational databases Regular expressions and restriction maps Using Perl to parse PDB records, annotations in GenBank, and BLAST output

Cumulated Index Medicus

Cumulated Index Medicus Book
Author : Anonim
Publisher : Unknown
Release : 1999
ISBN : 0987650XXX
Language : En, Es, Fr & De

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Book Description :

Download Cumulated Index Medicus book written by , available in PDF, EPUB, and Kindle, or read full book online anywhere and anytime. Compatible with any devices.

Algorithms in Bioinformatics

Algorithms in Bioinformatics Book
Author : Ben Raphael,Jijun Tang
Publisher : Springer
Release : 2012-08-29
ISBN : 364233122X
Language : En, Es, Fr & De

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Book Description :

This book constitutes the refereed proceedings of the 12th International Workshop on Algorithms in Bioinformatics, WABI 2012, held in Ljubljana, Slovenia, in September 2012. WABI 2012 is one of six workshops which, along with the European Symposium on Algorithms (ESA), constitute the ALGO annual meeting and focuses on algorithmic advances in bioinformatics, computational biology, and systems biology with a particular emphasis on discrete algorithms and machine-learning methods that address important problems in molecular biology. The 35 full papers presented were carefully reviewed and selected from 92 submissions. The papers include algorithms for a variety of biological problems including phylogeny, DNA and RNA sequencing and analysis, protein structure, and others.

Algorithms in Bioinformatics

Algorithms in Bioinformatics Book
Author : Gary Benson,Roderic Page
Publisher : Springer Science & Business Media
Release : 2003-09-09
ISBN : 9783540200765
Language : En, Es, Fr & De

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Book Description :

This book constitutes the refereed proceedings of the Third International Workshop on Algorithms in Bioinformatics, WABI 2003, held in Budapest, Hungary, in September 2003. The 36 revised full papers presented were carefully reviewed and selected from 78 submissions. The papers are organized in topical sections on comparative genomics, database searching, gene finding and expression, genome mapping, pattern and motif discovery, phylogenetic analysis, polymorphism, protein structure, sequence alignment, and string algorithms.

Algorithms in Bioinformatics

Algorithms in Bioinformatics Book
Author : Rita Casadio
Publisher : Springer Science & Business Media
Release : 2005-09-27
ISBN : 9783540290087
Language : En, Es, Fr & De

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Book Description :

This book constitutes the refereed proceedings of the 5th International Workshop on Algorithms in Bioinformatics, WABI 2005, held in Mallorca, Spain, in September 2005 as part of the ALGO 2005 conference meetings. The 34 revised full papers presented were carefully reviewed and selected from 95 submissions. All current issues of algorithms in bioinformatics are addressed with special focus on statistical and probabilistic algorithms in the field of molecular and structural biology. The papers are organized in topical sections on expression (hybrid methods and time patterns), phylogeny (quartets, tree reconciliation, clades and haplotypes), networks, genome rearrangements (transposition model and other models), sequences (strings, multi-alignment and clustering, clustering and representation), and structure (threading and folding).

Algorithms in Bioinformatics

Algorithms in Bioinformatics Book
Author : Teresa M. Przytycka,Marie-France Sagot
Publisher : Springer Science & Business Media
Release : 2011-08-30
ISBN : 3642230377
Language : En, Es, Fr & De

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Book Description :

This book constitutes the refereed proceedings of the 11th International Workshop on Algorithms in Bioinformatics, WABI 2011, held in Saarbrücken, Germany, in September 2011. The 30 papers presented were carefully reviewed and selected from 77 submissions. They cover aspects of algorithms in bioinformatics, computational biology and systems biology.

Algorithms in Bioinformatics

Algorithms in Bioinformatics Book
Author : Roderic Guigo,Dan Gusfield
Publisher : Springer Science & Business Media
Release : 2002-09-02
ISBN : 3540442111
Language : En, Es, Fr & De

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Book Description :

We are pleased to present the proceedings of the Second Workshop on Al- rithms in Bioinformatics (WABI 2002), which took place on September 17-21, 2002 in Rome, Italy. The WABI workshop was part of a three-conference me- ing, which, in addition to WABI, included the ESA and APPROX 2002. The three conferences are jointly called ALGO 2002, and were hosted by the F- ulty of Engineering, University of Rome “La Sapienza”. Seehttp://www.dis. uniroma1.it/ ̃algo02 for more details. The Workshop on Algorithms in Bioinformatics covers research in all areas of algorithmic work in bioinformatics and computational biology. The emphasis is on discrete algorithms that address important problems in molecular biology, genomics,andgenetics,thatarefoundedonsoundmodels,thatarecomputati- ally e?cient, and that have been implemented and tested in simulations and on real datasets. The goal is to present recent research results, including signi?cant work in progress, and to identify and explore directions of future research. Original research papers (including signi?cant work in progress) or sta- of-the-art surveys were solicited on all aspects of algorithms in bioinformatics, including, but not limited to: exact and approximate algorithms for genomics, genetics, sequence analysis, gene and signal recognition, alignment, molecular evolution, phylogenetics, structure determination or prediction, gene expression and gene networks, proteomics, functional genomics, and drug design.

WALCOM Algorithms and Computation

WALCOM  Algorithms and Computation Book
Author : Shin-ichi Nakano,Md. Saidur Rahman
Publisher : Springer Science & Business Media
Release : 2008-01-23
ISBN : 354077890X
Language : En, Es, Fr & De

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Book Description :

This book constitutes the refereed proceedings of the Second International Workshop on Algorithms and Computation, WALCOM 2008. It covers bioinformatics algorithms, computational geometry and graph drawing, graph algorithms, and algorithm engineering.

Algorithms in Bioinformatics

Algorithms in Bioinformatics Book
Author : Raffaele Giancarlo,Sridhar Hannenhalli
Publisher : Springer Science & Business Media
Release : 2007-08-22
ISBN : 3540741259
Language : En, Es, Fr & De

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Book Description :

The refereed proceedings from the 7th International Workshop on Algorithms in Bioinformatics are provided in this volume. Papers address current issues in algorithms in bioinformatics, ranging from mathematical tools to experimental studies of approximation algorithms to significant computational analyses. Biological problems examined include genetic mapping, sequence alignment and analysis, phylogeny, comparative genomics, and protein structure.

Bioinformatics Basics Algorithms and Applications

Bioinformatics  Basics  Algorithms and Applications Book
Author : Ruchi & Sharma Singh, Richa
Publisher : Unknown
Release : 2010-01-01
ISBN : 9788173717130
Language : En, Es, Fr & De

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Book Description :

Bioinformatics has been recognised and studied as a separate discipline only in the last decade. Being a multidisciplinary subject it requires knowledge of several subjects, such as molecular biology, biochemistry, computer science and others. Students in a bioinformatics course are from different academic backgrounds; those who have studied biology (i.e., botany, zoology, biochemistry, microbiology, etc.), will require an introduction to mathematics and computer science, while those with a background in physics, chemistry and mathematics will need explanations of biological principles.